I have a problem very much like the one described here:
I have two apps set up as startup apps (Skype and Dropbox), and there is no problem at all once the system boots. That is, until I use an app that requires or uses a systray icon (and apparently, it doesn't matter whether is closed or open source, because it happened both with Synkron and Teamviewer) and either a) Everything is messed up, with systray icons changing their respective order or b ) one of the icons being sent to the upper left corner (as described in the topic cited above)
Any clues on what is the source of this behavior?
I have the most recent install of Bodhi, AppPack 3.2.1...